- Naseby, 80 guns (renamed Royal Charles) Edward Montagu and Roger Cuttance
- London, 64 guns John Lawson
- Richard, 70 guns (renamed Royal James) John Stokes
- Bridgwater, 52 guns (renamed Anne) Thomas Bunn
- Langport, 50 guns (renamed Henrietta) John Coppin
- Plymouth, 52 guns John Hayward
- Speaker, 50 guns (renamed Mary) Robert Clark
- Swiftsure, 60 guns Sir Richard Staynor
- Assistance, 40 guns Thomas Sparling
- Centurion, 40 guns Francis Park
- Elias, 36 guns Mark Harrison
- Foresight, 40 guns Peter Mootham
- Hampshire, 38 guns Henry Tearne
- Nonsuch, 34 guns John Parker
- Portsmouth, 38 guns Robert Sansum
- Winsby, 44 guns (renamed Happy Return) Joseph Ames
- Yarmouth, 44 guns Charles Wager
- Bradford, 24 guns (renamed Success) Peter Bowen
- Cherriton, 20 guns (renamed Speedwell) Henry Cuttance
- Dartmouth, 22 guns Richard Rooth
- Norwich, 22 guns Michael Nutton
- Wakefield, 22 guns (renamed Richmond) John Pointz
- Francis, 10 guns William Dale
- Greyhound, 20 guns Jeremy Country
J.R. Tanner, A Descriptive Catalogue of the Naval Manuscripts in the Pepysian Library at Magdalene College, Cambridge, Vol.I, 1903.